Skip to content

Input Specifications

Some functions tightly adhere to these specifications and require a certain setup to work.
Most experiments require a specific input excel sheet containing information about assay parameters.

Because reproducibility is a very important topic, especially in science:

  • It is highly recommended to use uv for environments
  • Create a virtual environment for each project (Screen)
  • Always at least provide a requirements.txt (uv pip freeze > requirements.txt) for each finished project

Example Project Folder Structure

<YYYYMMDD_Assay_OrganismType>
├── code/
│   └── .venv/ # uv venv .venv
├── data/
│   ├── input/
│   │   └── <Assay>_Input.xlsx
│   ├── meta/
│   │   └── logs/
│   ├── processed/
│   ├── raw/
│   └── results/
├── figures/
├── methods/
│   └── module_01/
├── readme.md
└── report/